RNA-seq of Nicotiana attenuata roots - SRA

SRX17851427: RNA-seq of Nicotiana attenuata roots
1 ILLUMINA (Illumina NovaSeq 6000) run: 40.4M spots, 12.1G bases, 3.6Gb downloads

Design: Library preparations were sequenced on an Illumina NovaSeq platform and 150 bp paired-end reads were generated

Submitted by: Max-Planck Institute for Chemical Ecology

Study: Transcriptional sequencing of plant-AMF interaction

To identify the genes regulated by CCaMK and CCD1 in Nicotiana attenuata during AMF colonization, transcriptomic analysis was performed.

Sample:

Library:

Name: 1212-A3

Instrument: Illumina NovaSeq 6000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Runs: 1 run, 40.4M spots, 12.1G bases, 3.6Gb

Run	# of Spots	# of Bases	Size	Published
SRR21863709	40,400,906	12.1G	3.6Gb	2023-11-10

Supplemental Content

SH2 domain protein 1A, Duncan's disease (lymphoproliferative syndrome), isoform ...
SH2 domain protein 1A, Duncan's disease (lymphoproliferative syndrome), isoform CRA_b [Homo sapiens]
gi|119632253|gb|EAX11848.1||gnl|WGS |hCP35212

Protein
SH2 domain protein 1A, Duncan's disease (lymphoproliferative syndrome), isoform ...
SH2 domain protein 1A, Duncan's disease (lymphoproliferative syndrome), isoform CRA_e, partial [Homo sapiens]
gi|119632256|gb|EAX11851.1||gnl|WGS |hCP1884556

Protein
AGENCOURT_6562106 NIH_MGC_118 Homo sapiens cDNA clone IMAGE:5745348 5', mRNA seq...
AGENCOURT_6562106 NIH_MGC_118 Homo sapiens cDNA clone IMAGE:5745348 5', mRNA sequence
gi|18807596|gnl|dbEST|11135239|gb|B 34.1|

Nucleotide
MIMAT0016887 AND (alive[prop]) (0)
Gene

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